PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00948.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 291aa    MW: 31992.8 Da    PI: 5.0889
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00948.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141259249
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  +ien++ r+ tf kRr+g+ K A  LS+L++a+ a+++ s++gk+  +
  Zpz_sc00948.1.g00040.1.am.mk 12 FIENDRDRSLTFFKRRAGLYKAAADLSTLTGARLAIVLESESGKFSSF 59
                                  8*******************************************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-11162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.96363IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-9525IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-15672IPR002100Transcription factor, MADS-box
CDDcd001202.80E-16662No hitNo description
PfamPF003195.5E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MARRARRLGV SFIENDRDRS LTFFKRRAGL YKAAADLSTL TGARLAIVLE SESGKFSSFG  60
APATDPIVDA FLSGEDPMVY AYASEKQRAT IVELQNEGLR LEKDLVLEDQ RRKEFIGMVK  120
ELQESSRVAK FVYDKVEDLD VDELHEMYRE LSHVHQETQL LLRTTHQDAT VKGLTMDSYT  180
TTHPASSNVG SHNTNMVTIL HRVPDDAPTR TTSTKIAPTP IDKPYYTSLG GLNTDLGKTE  240
EIGGQTDVSL NLFGFSSGPL QGDGWIDEMI SETSSVGGNT GASARNNLLG A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971997.11e-60PREDICTED: transcription factor RLM1-like
TrEMBLC0HG358e-58C0HG35_MAIZE; MADS transcription factor
STRINGGRMZM2G375707_P012e-57(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-14M-type_MADS family protein